PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g003740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 531aa    MW: 59363.1 Da    PI: 5.354
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g003740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.15.1e-1191445283374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfsh 95 
                     ++Lle+A+a+s++d+++aq++L++l+el+sp+gd+ q+la+yf++AL +r+++s++++y+++ + +++ek+ s e +  ++  f+evsP+ +f+h
  Csa12g003740.1 144 SVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVlkFQEVSPWATFGH 238
                     78************************************************************999999988655544444468************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak 184
                     ++aN aIleav+ge ++Hi+D++ + ++QWp+Ll+aLa+R++++p+lR+T+v+ ++++      s+++++e+g+r++kfA+ +gvpf+fn++++ 
  Csa12g003740.1 239 VAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFvndqtaSHRMMKEIGNRMEKFARLMGVPFKFNIIHHV 333
                     *****************************************************999889999999**************************9666 PP

            GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse......sFlerflealeyysalfdsl 271
                      +l++++l+eL+vk++E+la+n+v ++h +     +  ++rd+v++ +++l+P++v+vve+ead+ ++e      +Fl++f e+l+++ ++f+s+
  Csa12g003740.1 334 gDLSEFDLNELDVKEDEVLAINCVGAMHGIA----PRGNPRDAVISNFRRLRPRIVTVVEEEADLiGEEeggfddEFLRGFGECLRWFRVCFESW 424
                     6*****************************8....888899************************7766899999******************** PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg..yrveeesgslv.lgWk 363
                     e+++pr+s+er ++Er+  gr++v++vace ++++er+et++kW++r+++ GF++v +s+++a+++++llr++k +g   +v++++++ + l+W+
  Csa12g003740.1 425 EESFPRTSNERLMLERA-AGRAVVDLVACEPSDSTERRETARKWSRRMRNGGFGAVGYSDEVADDVRALLRRYK-EGvwSMVQCSDAAGIfLCWR 517
                     *****************.********************************************************.4444788876665555**** PP

            GRAS 364 drpLvsvSaWr 374
                     d+p+v++SaWr
  Csa12g003740.1 518 DQPVVWASAWR 528
                     **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.732116506IPR005202Transcription factor GRAS
PfamPF035141.7E-116144528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV AEECFNFFMD  60
EEDLSSSSSH HNHHHTNPNT YYSPFTTPTQ YHPATSSTPS STAAAAALAS PYSSSGHHND  120
PSAFSIPQTP PSFDFSANAK WADSVLLEAA RAFSDKDTAR AQQILWTLNE LSSPYGDTEQ  180
KLASYFLQAL FNRMTGSGER CYRTMVTAAA TEKTCSFEST RKTVLKFQEV SPWATFGHVA  240
ANGAILEAVD GEAKIHIVDI SSTFCTQWPT LLEALATRSD DTPHLRLTTV VVANKFVNDQ  300
TASHRMMKEI GNRMEKFARL MGVPFKFNII HHVGDLSEFD LNELDVKEDE VLAINCVGAM  360
HGIAPRGNPR DAVISNFRRL RPRIVTVVEE EADLIGEEEG GFDDEFLRGF GECLRWFRVC  420
FESWEESFPR TSNERLMLER AAGRAVVDLV ACEPSDSTER RETARKWSRR MRNGGFGAVG  480
YSDEVADDVR ALLRRYKEGV WSMVQCSDAA GIFLCWRDQP VVWASAWRPT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-311465288375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2337520.0AF233752.1 Arabidopsis thaliana short-root protein (shr) gene, complete cds.
GenBankAL0356050.0AL035605.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F19F18 (ESSA project).
GenBankAL1615910.0AL161591.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87.
GenBankBT0330260.0BT033026.1 Arabidopsis thaliana unknown protein (At4g37650) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446640.10.0PREDICTED: protein SHORT-ROOT-like
SwissprotQ9SZF70.0SHR_ARATH; Protein SHORT-ROOT
TrEMBLA0A0D3DI670.0A0A0D3DI67_BRAOL; Uncharacterized protein
STRINGBra017842.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61042547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein